The drivers window in my 03 Aviator would not retract all the way into the door and would stick up about 1/2 an inch.
The steps found here worked to resolve the issue. http://automotivetoo...tor-expedition/
Quote
Ford calls the resetting process for the AUTO function on the Ford Expedition and the Lincoln Navigator – Initializing. To initialize the Auto function follow the steps below.
1. Begin with the driver’s DOOR OPEN and the ignition switch OFF.
2. Turn the ignition switch to the ON position without starting the vehicle.
3. Push the AUTO power window momentarily six times, it doesn’t matter up or down.
4. Turn the ignition switch OFF with the door still OPEN
5. Again, push the AUTO power window momentarily six times, it doesn’t matter up or down.
6. Turn the ignition switch to the ON position and the close the door. If the steps were followed properly the driver’s window will move slightly up and down telling you it has entered the INITIALIZATION mode.
7. HOLD the switch in the UP position until the window completely stops all the way up.
8. Press and release the driver’s switch DOWN. The window should go all the way down automatically.
9. Finally HOLD the button in the UP position until the window has a slight up and down motion indicating the process is complete.
The auto function should be working properly after following these steps, if not follow the steps over again. You gotta love Ford.
1. Begin with the driver’s DOOR OPEN and the ignition switch OFF.
2. Turn the ignition switch to the ON position without starting the vehicle.
3. Push the AUTO power window momentarily six times, it doesn’t matter up or down.
4. Turn the ignition switch OFF with the door still OPEN
5. Again, push the AUTO power window momentarily six times, it doesn’t matter up or down.
6. Turn the ignition switch to the ON position and the close the door. If the steps were followed properly the driver’s window will move slightly up and down telling you it has entered the INITIALIZATION mode.
7. HOLD the switch in the UP position until the window completely stops all the way up.
8. Press and release the driver’s switch DOWN. The window should go all the way down automatically.
9. Finally HOLD the button in the UP position until the window has a slight up and down motion indicating the process is complete.
The auto function should be working properly after following these steps, if not follow the steps over again. You gotta love Ford.

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